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2. X. Jiang, Q. Qin, H. Zhu, J. Qian, Q. Huang*. Structure-guided design of a trivalent nanobody cluster targeting SARS-CoV-2 spike protein. International Journal of Biological Macromolecules, 256:128191 (2024). .

3. M. Song, Y. Li, R. Gao, J. Liu, Q. Huang*. De novo design of DNA aptamers that target okadaic acid (OA) by docking-then-assembling of single nucleotides.Biosensors & Bioelectronics, 215:114562 (2022). .

4. R. Yao, J. Qian, Q. Huang*. Deep-learning with synthetic data enables automated picking of cryo-EM particle images of biological macromolecules. Bioinformatics, 36:1252-1259 (2020). .

5. Q. Liu, A. Herrmann, Q. Huang*. Surface binding energy landscapes affect phosphodiesterase isoform-specific inhibitor selectivity. Computational & Structural Biotechnology Journal，17:101-109 (2019). .

6. C. Huai^#, G. Li^#, R. Yao, Y. Zhang, M. Cao, L. Kong, C. Jia, H. Yuan, H. Chen, D. Lu*, Q. Huang*. Structural insights into DNA cleavage activation of CRISPR-Cas9 system. Nature Communications, 8:1375 (2017). .

7. J. Zhu, Q. Yang, D. Dai, Q. Huang*. X-ray crystal structure of phosphodiesterase 2 in complex with a highly selective, nanomolar inhibitor reveals a binding-induced pocket important for selectivity. Journal of the American Chemical Society, 135: 11708-11711 (2013). .

8. Q. Huang*, A. Herrmann. Calculating pH-dependent free energy of proteins by using Monte Carlo protonation probabilities of ionizable residues. Protein & Cell, 3:230-238 (2012). .

9. Q. Huang, C.- L. Chen, A. Herrmann. Bilayer conformation of fusion peptide of influenza virus hemagglutinin: a molecular dynamics simulation study. Biophysical Journal, 87:14-22 (2004). .

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